humm, i've used that app to disable ALL shell extensions but the problem persisted, tested another machine, AMD cpu, nvidia chipset, with win xp pro, it doesn't happen, tested again on my tablet with the folder tasks disabled and guess what... yeah it doesn't happen anymore, but there's no logic to the thing lol, another friend of mine tested the right click item followed by right clicking the folder background and it didn't happen to him, Intel cpu, so there goes my theory ( lol ).
yet, it isn't normal for a mouse pointer to slow down on high disk and low cpu activity.
another thing i remembered, notification area open/close animation also makes the mouse pointer to stop until the animation is finished, it's just for 200ms or something but it's anoying.
oh and, this doesn't happen with vista, on the same machine lol, but that's irrelevant lol, different OS, clean install.